Optimization of deep learning algorithms for an autonomous RC vehicle

Dissertação de mestrado em Engenharia InformáticaThis dissertation aims to evaluate and improve the performance of deep learning (DL) algorithms to autonomously drive a vehicle, using a Remo Car (an RC vehicle) as testbed. The RC vehicle was built with a 1:10 scaled remote controlled car and fitted with an embedded system and a video camera to capture and process real-time image data. Two different embedded systems were comparatively evaluated: an homogeneous system, a Raspberry Pi 4, and an heterogeneous system, a NVidia Jetson Nano. The Raspberry Pi 4 with an advanced 4-core ARM device supports multiprocessing, while the Jetson Nano, also with a 4-core ARM device, has an integrated accelerator, a 128 CUDA-core NVidia GPU. The captured video is processed with convolutional neural networks (CNNs), which interpret image data of the vehicle’s surroundings and predict critical data, such as lane view and steering angle, to provide mechanisms to drive on its own, following a predefined path. To improve the driving performance of the RC vehicle, this work analysed the programmed DL algorithms, namely different computer vision approaches for object detection and image classification, aiming to explore DL techniques and improve their performance at the inference phase. The work also analysed the computational efficiency of the control software, while running intense and complex deep learning tasks in the embedded devices, and fully explored the advanced characteristics and instructions provided by the two embedded systems in the vehicle. Different machine learning (ML) libraries and frameworks were analysed and evaluated: TensorFlow, TensorFlow Lite, Arm NN, PyArmNN and TensorRT. They play a key role to deploy the relevant algorithms and to fully engage the hardware capabilities. The original algorithm was successfully optimized and both embedded systems could perfectly handle this workload. To understand the computational limits of both devices, an additional and heavy DL algorithm was developed that aimed to detect traffic signs. The homogeneous system, the Raspberry Pi 4, could not deliver feasible low-latency values, hence the detection of traffic signs was not possible in real-time. However, a great performance improvement was achieved using the heterogeneous system, Jetson Nano, enabling their CUDA-cores to process the additional workload.Esta dissertação tem como objetivo avaliar e melhorar o desempenho de algoritmos de deep learning (DL) orientados à condução autónoma de veículos, usando um carro controlado remotamente como ambiente de teste. O carro foi construído usando um modelo de um veículo de controlo remoto de escala 1:10, onde foi colocado um sistema embebido e uma câmera de vídeo para capturar e processar imagem em tempo real. Dois sistemas embebidos foram comparativamente avaliados: um sistema homogéneo, um Raspberry Pi 4, e um sistema heterogéneo, uma NVidia Jetson Nano. O Raspberry Pi 4 possui um processador ARM com 4 núcleos, suportando multiprocessamento. A Jetson Nano, também com um processador ARM de 4 núcleos, possui uma unidade adicional de processamento com 128 núcleos do tipo CUDA-core. O vídeo capturado e processado usando redes neuronais convolucionais (CNN), interpretando o meio envolvente do veículo e prevendo dados cruciais, como a visibilidade da linha da estrada e o angulo de direção, de forma a que o veículo consiga conduzir de forma autónoma num determinado ambiente. De forma a melhorar o desempenho da condução autónoma do veículo, diferentes algoritmos de deep learning foram analisados, nomeadamente diferentes abordagens de visão por computador para detecção e classificação de imagens, com o objetivo de explorar técnicas de CNN e melhorar o seu desempenho na fase de inferência. A dissertação também analisou a eficiência computacional do software usado para a execução de tarefas de aprendizagem profunda intensas e complexas nos dispositivos embebidos, e explorou completamente as características avançadas e as instruções fornecidas pelos dois sistemas embebidos no veículo. Diferentes bibliotecas e frameworks de machine learning foram analisadas e avaliadas: TensorFlow, TensorFlow Lite, Arm NN, PyArmNN e TensorRT. Estes desempenham um papel fulcral no provisionamento dos algoritmos de deep learning para tirar máximo partido das capacidades do hardware usado. O algoritmo original foi otimizado com sucesso e ambos os sistemas embebidos conseguiram executar os algoritmos com pouco esforço. Assim, para entender os limites computacionais de ambos os dispositivos, um algoritmo adicional mais complexo de deep learning foi desenvolvido com o objetivo de detectar sinais de transito. O sistema homogéneo, o Raspberry Pi 4, não conseguiu entregar valores viáveis de baixa latência, portanto, a detecção de sinais de trânsito não foi possível em tempo real, usando este sistema. No entanto, foi alcançada uma grande melhoria de desempenho usando o sistema heterogeneo, Jetson Nano, que usaram os seus núcleos CUDA adicionais para processar a carga computacional mais intensa

An approach to predict chemical composition of goat Longissimus thoracis et lumborum muscle by Near Infrared Reflectance spectroscopy

The ability of near infrared reflectance spectroscopy (NIRS) to estimate the protein, moisture, connective tissue and ash content in the Longissimus thoracis et lumborum (LTL) muscle of goat was studied. Samples (n=240) of the LTL muscle were taken from the 8th to 13th rib cut of goat carcasses. Samples were scanned in a FT-NIR Master™ N500 (BÜCHI) over a NIR spectral range of 4000-10,000cm -1 with a resolution of 4cm -1 . It was collected 3 spectra per sample and subsequently, chemical analyses were performed at the Carcass and Meat Quality Laboratory of ESA-IPB. Using NirCal 1.5 it was developed a PLS regression model assaying, first and second derivatives as math treatment and multiplicative scatter correction for minimizing scattering effect on the spectra database recorded (n=240). The best calibrations' models show relatively good predictability for protein (standard error of prediction SEP=0.43; coefficient of determination R 2 =0.91), moisture (SEP=0.48; R 2 =0.92). Calibrations' models obtained are important as a first attempt to predict the chemical composition of goat meat by NIRS. More experimental data are needed to improve the accuracy of these calibrations.We gratefully acknowledge QREN-COMPETE, POREGIONAL DO NORTE, for financial support of the Project BISOVICAP (Project QREN SI I&DT Co-Promotion n◦21511/201).info:eu-repo/semantics/publishedVersio

Portuguese Football Federation consensus statement 2020: nutrition and performance in football

Nutrition is an undeniable part of promoting health and performance among football (soccer) players. Nevertheless, nutritional strategies adopted in elite football can vary significantly depending on culture, habit and practical constraints and might not always be supported by scientific evidence. Therefore, a group of 28 Portuguese experts on sports nutrition, sports science and sports medicine sought to discuss current practices in the elite football landscape and review the existing evidence on nutritional strategies to be applied when supporting football players. Starting from understanding football's physical and physiological demands, five different moments were identified: preparing to play, match-day, recovery after matches, between matches and during injury or rehabilitation periods. When applicable, specificities of nutritional support to young athletes and female players were also addressed. The result is a set of practical recommendations that gathered consensus among involved experts, highlighting carbohydrates periodisation, hydration and conscious use of dietary supplements.info:eu-repo/semantics/publishedVersio

MAMMALS IN PORTUGAL : A data set of terrestrial, volant, and marine mammal occurrences in P ortugal

Mammals are threatened worldwide, with 26% of all species being includedin the IUCN threatened categories. This overall pattern is primarily associatedwith habitat loss or degradation, and human persecution for terrestrial mam-mals, and pollution, open net fishing, climate change, and prey depletion formarine mammals. Mammals play a key role in maintaining ecosystems func-tionality and resilience, and therefore information on their distribution is cru-cial to delineate and support conservation actions. MAMMALS INPORTUGAL is a publicly available data set compiling unpublishedgeoreferenced occurrence records of 92 terrestrial, volant, and marine mam-mals in mainland Portugal and archipelagos of the Azores and Madeira thatincludes 105,026 data entries between 1873 and 2021 (72% of the data occur-ring in 2000 and 2021). The methods used to collect the data were: live obser-vations/captures (43%), sign surveys (35%), camera trapping (16%),bioacoustics surveys (4%) and radiotracking, and inquiries that represent lessthan 1% of the records. The data set includes 13 types of records: (1) burrowsjsoil moundsjtunnel, (2) capture, (3) colony, (4) dead animaljhairjskullsjjaws, (5) genetic confirmation, (6) inquiries, (7) observation of live animal (8),observation in shelters, (9) photo trappingjvideo, (10) predators dietjpelletsjpine cones/nuts, (11) scatjtrackjditch, (12) telemetry and (13) vocalizationjecholocation. The spatial uncertainty of most records ranges between 0 and100 m (76%). Rodentia (n=31,573) has the highest number of records followedby Chiroptera (n=18,857), Carnivora (n=18,594), Lagomorpha (n=17,496),Cetartiodactyla (n=11,568) and Eulipotyphla (n=7008). The data setincludes records of species classified by the IUCN as threatened(e.g.,Oryctolagus cuniculus[n=12,159],Monachus monachus[n=1,512],andLynx pardinus[n=197]). We believe that this data set may stimulate thepublication of other European countries data sets that would certainly contrib-ute to ecology and conservation-related research, and therefore assisting onthe development of more accurate and tailored conservation managementstrategies for each species. There are no copyright restrictions; please cite thisdata paper when the data are used in publications.info:eu-repo/semantics/publishedVersio

Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear un derstanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5–7 vast areas of the tropics remain understudied.8–11 In the American tropics, Amazonia stands out as the world’s most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepre sented in biodiversity databases.13–15 To worsen this situation, human-induced modifications16,17 may elim inate pieces of the Amazon’s biodiversity puzzle before we can use them to understand how ecological com munities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple or ganism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region’s vulnerability to environmental change. 15%–18% of the most ne glected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lostinfo:eu-repo/semantics/publishedVersio

Mammals in Portugal: a data set of terrestrial, volant, and marine mammal occurrences in Portugal

Mammals are threatened worldwide, with ~26% of all species being included in the IUCN threatened categories. This overall pattern is primarily associated with habitat loss or degradation, and human persecution for terrestrial mammals, and pollution, open net fishing, climate change, and prey depletion for marine mammals. Mammals play a key role in maintaining ecosystems functionality and resilience, and therefore information on their distribution is crucial to delineate and support conservation actions. MAMMALS IN PORTUGAL is a publicly available data set compiling unpublished georeferenced occurrence records of 92 terrestrial, volant, and marine mammals in mainland Portugal and archipelagos of the Azores and Madeira that includes 105,026 data entries between 1873 and 2021 (72% of the data occurring in 2000 and 2021). The methods used to collect the data were: live observations/captures (43%), sign surveys (35%), camera trapping (16%), bioacoustics surveys (4%) and radiotracking, and inquiries that represent less than 1% of the records. The data set includes 13 types of records: (1) burrows | soil mounds | tunnel, (2) capture, (3) colony, (4) dead animal | hair | skulls | jaws, (5) genetic confirmation, (6) inquiries, (7) observation of live animal (8), observation in shelters, (9) photo trapping | video, (10) predators diet | pellets | pine cones/nuts, (11) scat | track | ditch, (12) telemetry and (13) vocalization | echolocation. The spatial uncertainty of most records ranges between 0 and 100 m (76%). Rodentia (n =31,573) has the highest number of records followed by Chiroptera (n = 18,857), Carnivora (n = 18,594), Lagomorpha (n = 17,496), Cetartiodactyla (n = 11,568) and Eulipotyphla (n = 7008). The data set includes records of species classified by the IUCN as threatened (e.g., Oryctolagus cuniculus [n = 12,159], Monachus monachus [n = 1,512], and Lynx pardinus [n = 197]). We believe that this data set may stimulate the publication of other European countries data sets that would certainly contribute to ecology and conservation-related research, and therefore assisting on the development of more accurate and tailored conservation management strategies for each species. There are no copyright restrictions; please cite this data paper when the data are used in publications

Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear understanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5,6,7 vast areas of the tropics remain understudied.8,9,10,11 In the American tropics, Amazonia stands out as the world's most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepresented in biodiversity databases.13,14,15 To worsen this situation, human-induced modifications16,17 may eliminate pieces of the Amazon's biodiversity puzzle before we can use them to understand how ecological communities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple organism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region's vulnerability to environmental change. 15%–18% of the most neglected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lost

Floristic survey of vascular plants of a poorly known area in the Brazilian Atlantic Forest (Flona do Rio Preto, Espírito Santo)

The Atlantic Forest is one of the most threatened biomes in the world. Despite that, this biome still includes many areas that are poorly known floristically, including several protected areas, such as the "Floresta Nacional do Rio Preto" ("Flona do Rio Preto"), located in the Brazilian State of Espírito Santo. This study used a published vascular plant species list for this protected area from the "Catálogo de Plantas das Unidades de Conservação do Brasil" as the basis to synthesise the species richness, endemism, conservation and new species occurrences found in the "Flona do Rio Preto".The published list of vascular plants was based on field expeditions conducted between 2018 and 2020 and data obtained from herbarium collections available in online databases. Overall, 722 species were documented for the "Flona do Rio Preto", 711 of which are native to Brazil and 349 are endemic to the Atlantic Forest. In addition, 60 species are geographically disjunct between the Atlantic and the Amazon Forests. Most of the documented species are woody and more than 50% of these are trees. Twenty-three species are threatened (CR, EN and VU), while five are Data Deficient (DD). Thirty-two species are new records for the State of Espírito Santo. Our results expand the knowledge of the flora of the Atlantic Forest and provide support for the development of new conservation policies for this protected area